.. pcsindels documentation master file, created by
   sphinx-quickstart on Mon Apr 28 14:02:23 2025.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to PCS indel's documentation!
=====================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   intro
   1_extractPCS
   2_computeWindows
   3_setupEvolTimes
   4_estimateEvolTimes
   5_sampleEvolTimes
   6_1_plotFig_PcsDistribComp
   6_2_plotFig_EvolTimesComp
   6_3_plotFig_MutRatesComp
   6_4_plotFig_FuncClasses